Scout Calvert: Standardization on the Hoof

Standardization on the Hoof: Pedigrees, Genetic Disease, and Genomic-Enhanced EPDs

Scout Calvert (Wayne State University)

April 13, 2011

Engineering 2 599, 4:30-6:30

The SJWG is very pleased to welcome back Scout Calvert, who was one of our original members and earned her PhD from History of Consciousness.

Abstract: For decades, beef breed associations have been gathering performance data on registered animals that have become the basis for “expected progeny differences,” calculations made by comparing the cattle in electronic pedigrees, or herdbooks. The American Angus Association began digitizing its herdbook in the 1960s. In 1978, it launched the Certified Angus Beef branding program, a marketing promotion that has successfully made the Angus breed co-extensive with succulent beef through a voluntary certification process, and which enables small but important premiums for beef growers. As EPDs became popular tools for the selection of artificial insemination sires, three genetic diseases reached frequencies of 10% or more in the pure-bred population. EPDs coordinated a shared quest for Angus certification that also resulted in a catastrophic narrowing of the Angus gene pool. Still reeling from the identification of these three diseases since 2008, in 2010, the Angus Association introduced Genomic-Enhanced EPDs. These pedigrees now include data from genetic markers for desirable phenotype characteristics, an innovation with ramifications for animal breeders and human genealogists alike.

Authority, Expertise and Power in Mexican Forests: A Discussion with Andrew Mathews

Tuesday May 22, 2012

4-6:00 PM

Engineering 2, 599

Join us for a discussion of Science & Justice member Andrew Matthew’s recently released book, Instituting Nature: Authority, Expertise and Power in Mexican Forests (MIT Press).

Greater knowledge and transparency are often promoted as the keys to solving a wide array of governance problems. In Instituting Nature, Andrew Mathews describes Mexico’s efforts over the past hundred years to manage its forests through forestry science and biodiversity conservation. He shows that transparent knowledge was produced not by official declarations or scientists’ expertise but by encounters between the relatively weak forestry bureaucracy and the indigenous people who manage and own the pine forests of Mexico. Mathews charts the performances, collusions, complicities, and evasions that characterize the forestry bureaucracy. He shows that the authority of forestry officials is undermined by the tension between local realities and national policy; officials must juggle sweeping knowledge claims and mundane concealments, ambitious regulations and routine rule breaking.
Moving from government offices in Mexico City to forests in the state of Oaxaca, Mathews describes how the science of forestry and bureaucratic practices came to Oaxaca in the 1930s and how local environmental and political contexts set the stage for local resistance. He tells how the indigenous Zapotec people learned the theory and practice of industrial forestry as employees and then put these skills to use when they become the owners and managers of the area’s pine forests–eventually incorporating forestry into their successful claims for autonomy from the state. Despite the apparently small scale and local contexts of this balancing act between the power of forestry regulations and the resistance of indigenous communities, Mathews shows that it has large implications–for how we understand the modern state, scientific knowledge, and power and for the global carbon markets for which Mexican forests might become valuable.

Slow Science? Fast Science? How Pace Matters in Science

October 6th, 2010
Slow Science? Fast Science? How Pace Matters in Science
October 6, 2010, 4:30-6:30
Engineering 2, 599
A brief perusal of key scientific journals and science policy documents reveals that questions about how fast science can produce new knowledge and innovation has become a widely acknowledged concern. Scientists promise to be close to breakthroughs, policy makers argue that “we”

Are You My Data? Symposium

Conference hosted by the Science & Justice Working Group Conference
sponsored by the UCSC Office of Research, and the UCSC Cancer Genomic Hub

Rap Report > Are You My Data? Symposium

With a human genome sequenced and a map of variable sites in that genome created, governments and many other public and private actors now seek to make genomic data relevant to health, medicine and the society. However, to do so they must navigate the conjunction of two different approaches to data. Within the biomedical domain there are important, well-articulated infrastructures and commitments arising out of concerns about individual rights, patient privacy and the doctor-patient relationship that limit access to biomedical data. This stands in stark contrast to the culture of open access forged by those who worked on the Human Genome Project, and that has continued to be a central commitment of ongoing Human Genome research. Thus, architects of the genomic revolution face competing, complex technical and ethical challenges that arise from this meeting of these domains with substantially different ethos. Additionally, the rise of social media has led to a broad and contested discussion about the proper relationship between persons and data and who profits through access to it.Continue Reading Are You My Data? Symposium

Eating Information? Food and Metabolism in Epigenetic Perspective

Hannah Landecker (UCLA Center for Genetics and Society)

January 26, 2012, 3:00-5:00 PM

Engineering 2, Room 399

Epigenetics has turned food and its metabolism into a problem that is not just about how the body turns food its basic components–carbohydrates, fat, protein-but how food acts as a signal of the environment–both biological and political. Hannah Landecker will explore what this transformation of metabolism and epigenetics reveals about food, environmental politics, and the increased salience of metabolism as a sight for biological understanding and political and moral contestation.

Information, but Meaning? The Value of Genomics

Science & Justice Working Group Meeting
Andro Hsu with discussion by Ted Goldstein and Whitney Boesel

November 9, 2011

Engineering 2, Room 599

4:15-6:15 PM

Andro Hsu (VP of Products at GigaGen and former science writer and policy advisor at 23andMe) will join us for a discussion of what we are learning—both about policy/society and biology—as increasing resources are put into turning the ever growing amounts of genomic information into something of value. Ted Goldstein, PhD candidate at the UCSC Center for Biomolecular Sciences and Engineering, will provide a response to Hsu presentation.

Mark Diekhans: “Art of Genome Browsing”
SJWG Rapporteur Report
14 November 2007
Mark Diekhans, a technician on the Human Genome Browser (HGB) team here at UCSC offered
the SJWG a chance to observe and discuss the browser (http://genome.ucsc.edu). His tour
included an overview of genomes and genome biology, an introduction to the HGB, examples of
the kind of information displayed through the browser, and a demonstration of how to search the
browser. In Mark’s words, the browser is a ‘visualization in reference genome space’ that
organizes data in annotation tracks mapped onto chromosome sequences. Annotation tracks can
be viewed at many different levels, from chromosome to base sequences. There are presently 41
different species displayed on the browser. Access to the browser (designed by Jim Kent at
UCSC in 2000) is freely available to researchers and the public. Mark’s introduction to basic
genomics included a discussion of genes, transposons, single nucleotide polymorphisms, and
short tandem repeats, all of which are important to interpreting the data displayed in the browser.
Mark also shared cautionary case studies about how genomics data can be misinterpreted
(especially by the press), including BRCA1 (‘the breast cancer gene’) and FOXP2 (‘the speech
gene’).
The first point of departure for discussion was the notion of a ‘reference genome.’ The browser
displays comparisons across species specific reference genomes, which stand in as a
representative of a species. The human reference genome is the haploid genome of an
anonymous male donor from Buffalo, NY, and does not in anyway represent an ‘ideal’ human
genome. Comparison across references allows genomics researchers to identify the location of
functional and historical elements by aligning patterns across genomes. Discussion included
concerns about the use of the phrase ‘the human genome’ when the information displayed is
actually ‘a human genome.’ Mark noted that although the reference genome is one person’s,
when an important region is studied there are samples taken from a variety of people to account
for a partial set possible variations. The references for such data are accessible from the browser.
The discussion about reference genomes lead to a discussion concerning how genomics data
might be displayed to represent different kinds of relationships between organisms. As it is
arranged now the browser is most useful for examining evolutionary relationships, particularly
the conservation of certain genes through ancestral histories. Hiram noted that genomics is
primarily about telling evolutionary histories—since every genetic trait must be received from an
ancestor, a genomics perspective is ultimately about ancestry. Donna suggested that there are
other kinds of relationships that are of substantial interest that are interrelated with genomics and
profoundly useful, such as toxicogenomics. Rather than being interested in straightforward
ancestry, a researcher may want to know about the genomics elements of a present
environmental problem. These relationships require a different temporality than what is
available on the browser.

“Another World is Plantable!” Film Screening with director Ella von der Haide

Documentary on Community Gardening and Food Justice in North America 2010

 

Urban community gardening is a phenomenon that is spreading throughout the world. At the core of the films are gardening activists who explain how and why their gardens are a “green oasis” within the city, as well as projects of resistance that bring “another world” into being. The films also show the critical and ambivalent ways in which the gardening movements can be instrumented by neoliberal regimes.

North America has a vibrant  community garden scene that is currently developing into a broad social movement for food justice. Through the local production of ecological food for subsistence and for sale at farmers’ markets, community gardeners not only construct an alternative to the agro-industrial business and “food deserts”, they simultaneously create a new local self-reliance and new discourses on justice.

In a series of four documentaries, film director Ella von der Haide features urban community gardens and their connections to emancipatory social movements in South Africa, Argentina, Germany and North America. The community gardens portrayed in this film, in New York, Detroit, San Francisco and Vancouver, are all engaged in different social change processes, from anti-racist resistance and post-colonial healing to indigenous self-determination and queer-feminist environmental politics.

The director will be present for Q&A.

More information on the film and research: www.communitygarden.de

Information on the director:

Ella von der Haide is a Dipl.-Ing. of Urban and Regional Planning, Garden Activist and feminist Filmmaker from Germany.

Contact: post@ella-von-der-haide.de

Sponsored by: SJWG, Film & Digital Media, and Center for Agroecology and Sustainable Food Systems

October 27, 2011, 4:30-6:30 PM | Studio C (Room 150 in Communications Building)

Ella von der Haide: Film Screeing

Ella von der Haide: Film Screeing

Wednesday, October 26 2011

4:15-6:15 PM, Location TBA

Filmmaker, community garden activist, and feminist theorist Ella von der Haide will be screening two new films about agro-ecology and community gardening, titled “Community Gardens in the US” and “Seed Saving, Seed Activism and Seed Legislation.”

Conference: The State of Science and Justice: Conversations in Honor of Susan Leigh Star

 

Rap Report > The State of Science & Justice: Conversations in Honor of Susan Leigh Star

The conference will broadly discuss the role of justice in the topics and methods of Science & Technology Studies. The themes of the conference are organized around the work of Leigh Star, a friend and mentor to many members of the UCSC Science & Justice community. Geoffrey Bowker (Professor and Senior Scholar in Cyberscholarship, University of Pittsburgh), Leigh’s partner, will give the keynote presentation.

June 2-3, 2011 | UCSC University Center